PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 88aa    MW: 9864.94 Da    PI: 8.9128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32487genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-081761344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ E +l+ +a + +G g   +W +++r mg ++ + +++ ++
         EMT32487 17 EWSKKENKLFEEALAYYGEGmpdRWLKVSRAMGGTKNADEVRRHY 61
                     7********************************99*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.6E-41467IPR001005SANT/Myb domain
SuperFamilySSF466897.4E-111670IPR009057Homeodomain-like
CDDcd001671.69E-41761No hitNo description
PfamPF002491.4E-61761IPR001005SANT/Myb domain
PROSITE profilePS500906.1561865IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSSGSRSSS HGGANPEWSK KENKLFEEAL AYYGEGMPDR WLKVSRAMGG TKNADEVRRH  60
YEILDGDIKL IDSGRVPFPK YNTQGAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-23885277RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739371e-107AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569502.13e-40PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS38e-24RAD_ANTMA; Transcription factor RADIALIS
TrEMBLM8CXQ72e-60M8CXQ7_AEGTA; Uncharacterized protein
STRINGMLOC_75951.16e-40(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-22RAD-like 1